Joel Jaramillo Biomedical engineering undergraduate

This is my brain's cortical surface, reconstructed from a research MRI with FreeSurfer 7.4.1. It's an anatomical visualization, not a medical image or a diagnosis. The backdrop can show a live 3D model of the cortex, slices of the T1 MRI (brain only, resampled to 1.5 mm), or a still image. The Explore page adds deep structures and a movable MRI slice plane. Every cortical region is also listed as text on the About page.

Viewer

Explore

Drag to rotate. Make the cortex glass to see the deep structures inside and click one to name it.

Deep structures are meshes from FreeSurfer's labels of my scan. Anatomical, not diagnostic. Methods.

Surface
Cortex
Cortex color
Deep structures
  • Thalamus
  • Caudate nucleus
  • Putamen
  • Globus pallidus
  • Hippocampus
  • Amygdala
  • Nucleus accumbens
  • Ventral diencephalon
  • Lateral ventricle
  • Cerebellum
  • Brainstem